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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10038261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LBD | ||||||||
Protein Properties | Length: 308aa MW: 34709.4 Da PI: 6.1364 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.6 | 2.7e-40 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk++rrkC+++C++ap+fp +qp+kfa +hk+FGasnv kll++lp+ re+a+ sl yeA ar+rdPvyG+vg i++lq++l+q + e+++++ Lus10038261 7 PCAACKLQRRKCTQECIFAPHFPPDQPQKFADIHKVFGASNVAKLLSELPTMSREEAVISLSYEAGARIRDPVYGCVGAISELQHRLKQIHMEIDATR 104 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Lus10038261 105 QE 106 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.567 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-40 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MSHSQQPCAA CKLQRRKCTQ ECIFAPHFPP DQPQKFADIH KVFGASNVAK LLSELPTMSR 60 EEAVISLSYE AGARIRDPVY GCVGAISELQ HRLKQIHMEI DATRQELLKY MGPNNQQQDQ 120 AFMIPNLATA SFIAPSTHHQ NQQQQQQNMM MQMMGRGGGG HQMLEAQLMA TELNSTTDRG 180 EQLQQQQHHE MFRVYEQREQ QQQQQHHNQH EVIGFSNGNG IMDDHVPNSI GFNQISIGEV 240 EPCLALGSMD DQNSHHHQQQ VNNEQSQVEI PVHHEQLFFH SEHHEPDLNH HQSSGSDEGG 300 NSGPSLS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 6e-53 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10038261 |