PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10038261

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 308aa MW: 34709.4 Da PI: 6.1364

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10038261	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.6	2.7e-40	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk++rrkC+++C++ap+fp +qp+kfa +hk+FGasnv kll++lp+ re+a+ sl yeA ar+rdPvyG+vg i++lq++l+q + e+++++ Lus10038261 7 PCAACKLQRRKCTQECIFAPHFPPDQPQKFADIHKVFGASNVAKLLSELPTMSREEAVISLSYEAGARIRDPVYGCVGAISELQHRLKQIHMEIDATR 104 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Lus10038261 105 QE 106 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.567	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-40	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MSHSQQPCAA CKLQRRKCTQ ECIFAPHFPP DQPQKFADIH KVFGASNVAK LLSELPTMSR 60 EEAVISLSYE AGARIRDPVY GCVGAISELQ HRLKQIHMEI DATRQELLKY MGPNNQQQDQ 120 AFMIPNLATA SFIAPSTHHQ NQQQQQQNMM MQMMGRGGGG HQMLEAQLMA TELNSTTDRG 180 EQLQQQQHHE MFRVYEQREQ QQQQQHHNQH EVIGFSNGNG IMDDHVPNSI GFNQISIGEV 240 EPCLALGSMD DQNSHHHQQQ VNNEQSQVEI PVHHEQLFFH SEHHEPDLNH HQSSGSDEGG 300 NSGPSLS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	6e-53	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	Lus10038261